polyA
polyA.alignment
polyA.calc_repeat_scores
polyA.calculate_score
polyA.collapse_matrices
polyA.confidence_cm
polyA.constants
polyA.converters
polyA.converters.cm_to_stockholm
polyA.converters.rm_to_stockholm
polyA.edges
polyA.exceptions
polyA.extract_nodes
polyA.fill_align_matrix
polyA.fill_confidence_matrix
polyA.fill_consensus_position_matrix
polyA.fill_node_confidence
polyA.fill_path_graph
polyA.fill_probability_matrix
polyA.fill_support_matrix
polyA.get_path
polyA.lambda_provider
polyA.load_alignments
polyA.matrices
polyA.output
polyA.pad_sequences
polyA.performance
polyA.print_helpers
polyA.printers
polyA.prior_counts
polyA.substitution_matrix
polyA.sum_repeat_scores
polyA.ultra_provider